hey just a note to let you guys know that when using the project upgrade utility or addin, to upgrade a web project. It doesn't change references in a Master page.
Sorry to hear you had this issue; we currently don't have any reported issues where the tool doesn't upgrade Master Pages. Can you provide some more information about your project?
My response is after each question you asked.
What version where you coming from? = VS 2008 sp2
What version where you coming from? = Version=8.2.20082.1000
What controls specifically did you have on the Master Page?
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Are you using a File System setup, or project? It's a solution file mutiple projects. It gets compiled and installed using windows installer
this was a fresh install on a VM, the only product of Inragistics was the 2009.1 installation.
It did all web pages just fine, just had trouble with the master page.
I've just researched this, and using a simple application have verified that there appears to be a bug in the utility when dealing with master pages. I've sent this forum thread over to Developer Support so that a case can be opened, and bug logged so the issue can be resolved.